Thank you guys for your help. After reading your responses, I decided to go back with a new module, pilot and wiring harness. I cleaned and tightened up all electric connections everywhere, especially the grounds. The new pilot had a local sensing, so that eliminated the flame rod. The furnace has been working ever since, knocking on wood.
The module will go in to a permanent lock out on the “Flame Out of Sequence “
Honeywell Tech assistances had no clue.